PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1020
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 280aa    MW: 32303.5 Da    PI: 9.5213
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1020genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.5e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed llv++++ +G g+W++ +++ g+ R++k+c++rw +yl
      Gh_A12G1020 14 RGPWTPREDTLLVKYIQAHGEGHWRSFPKKAGLLRCGKSCRLRWMNYL 61
                     89******************************99************97 PP

2Myb_DNA-binding52.98.3e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T++E++l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
      Gh_A12G1020  67 RGNITPDEEDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                      7999******************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.736961IPR017930Myb domain
SuperFamilySSF466899.54E-3011108IPR009057Homeodomain-like
SMARTSM007173.3E-111363IPR001005SANT/Myb domain
PfamPF002495.7E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-231568IPR009057Homeodomain-like
CDDcd001672.40E-91661No hitNo description
PROSITE profilePS5129426.30262116IPR017930Myb domain
SMARTSM007173.7E-1666114IPR001005SANT/Myb domain
PfamPF002492.4E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-2669116IPR009057Homeodomain-like
CDDcd001676.78E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGRAPCCSKV GLHRGPWTPR EDTLLVKYIQ AHGEGHWRSF PKKAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI TPDEEDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKRLLSQG  120
TDPNTHKKLP PDNPVVVLVP KKKRKKSNKR PNKSKKPTEQ EKPKIHLPKP IRFTSSVQCT  180
TKSSSQGGEN GQVLVPWSEY INDDENRTRF LCYNDDHDLI NNSDFECQSH HHHHHHHDHG  240
LGAQGDSNDS LEKIYEEYLQ LLKTNEDQVQ LDSFAESLLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139155PKKKRKKSNKRPNKSKK
2141145KKRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU3243461e-116GU324346.1 Theobroma cacao cultivar Scavina 6 TT2 like MYB transcriptoin factor (MYBPA) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437779.10.0PREDICTED: transcription repressor MYB6-like
TrEMBLA0A0B0PUN60.0A0A0B0PUN6_G
STRINGPOPTR_0002s17460.11e-111(Populus trichocarpa)
STRINGPOPTR_0014s09630.11e-111(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-69myb domain protein 5